Index

B

basic_coalescent() (in module isweep.coalescent) big_format_distribution() (in module isweep.utilities) bin_ibd_segments() (in module isweep.utilities)

bootstrap_freq() (in module isweep.inference) bootstrap_percentile() (in module isweep.inference) bootstrap_standard() (in module isweep.inference) bootstrap_standard_bc() (in module isweep.inference)

C

chi2_isweep() (in module isweep.inference)

chi2_labeled_isweep() (in module isweep.inference)

D

diameter_communities() (in module isweep.outgroups)

E

empty_function() (in module isweep.slow)

M

make_constant_Ne() (in module isweep.utilities)

make_exponential_Ne() (in module isweep.utilities) make_ibd_graph() (in module isweep.outgroups)

P

probability_ibd() (in module isweep.coalescent)

probability_ibd_isweep() (in module isweep.coalescent)

R

read_ibd_file() (in module isweep.inference)

read_Ne() (in module isweep.utilities)

S

simulate_ibd() (in module isweep.coalescent) simulate_ibd_constant() (in module isweep.coalescent)

simulate_ibd_isweep() (in module isweep.coalescent) simulate_ibd_isweep_tv() (in module isweep.coalescent) simulate_ibd_split() (in module isweep.coalescent)

V

varying_Ne_coalescent() (in module isweep.coalescent)

W

walk_variant_backward() (in module isweep.coalescent) walk_variant_backward_tv() (in module isweep.coalescent)

walk_variant_forward() (in module isweep.coalescent) when_freq() (in module isweep.inference) write_Ne() (in module isweep.utilities)